PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016490632.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 252aa    MW: 28205 Da    PI: 8.6382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016490632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_016490632.1 102 FSCNYCQRKFYSSQALGGHQNAH 124
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.66E-699129No hitNo description
PROSITE profilePS5015711.427102129IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVTLKRDVHL HPKGGQDALS SSSSSSCQDE RNYHKQEEDH QNAIEDIRLR GKSNGDGDGD  60
DDESDHRKNN QELNLLERLN TNKSPICNEN DPTSDGAEPR VFSCNYCQRK FYSSQALGGH  120
QNAHKRERTL AKRAGQRPIG HHLFNFTPAA AAAAFGHHPY LRVQHQNNYN FVSSMSTLPL  180
NGANNQNNSL GIQAHSMIHK TTNSSGNWSN RQFIKHQPGV GKLSVIPKGN IHFIPQEENK  240
SDLQKIDLSL KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767947.10.0PREDICTED: zinc finger protein 1-like
RefseqXP_016490632.10.0PREDICTED: zinc finger protein 1-like
TrEMBLA0A124SBD23e-44A0A124SBD2_CYNCS; Zinc finger, C2H2
STRINGVIT_04s0008g05930.t019e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1573967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-32zinc-finger protein 1